Publications
PhageScanner: a reconfigurable machine learning framework for bacteriophage genomic and metagenomic feature annotation
A reconfigurable machine learning framework for bacteriophage genomic and metagenomic feature annotation.
PhageBox: an open source digital microfluidic extension with applications for phage discovery
An Open Source Digital Microfluidic Extension with Applications for Phage Discovery.
PhageScanner, a flexible machine learning pipeline for automated bacteriophage genomic and metagenomic feature annotation
Preprint describing the PhageScanner pipeline.
The Phage Toolbox: Automating Phage Discovery Using Novel Software, Devices, and High-Throughput Methodology
PhD dissertation on automating bacteriophage research.
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning
Accurate and sensitive functional screening of pathogenic sequences via ensemble learning.
TCDD exposure alters fecal IgA concentrations in male and female mice
Study on the effects of TCDD exposure on fecal IgA concentrations.
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission
Investigation into the hidden genomic diversity of SARS-CoV-2.
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates
Methods from the NCBI Structural Variation Codeathon.
An evolutionarily conserved RNA structure in the functional core of the lincRNA Cyrano
Study of conserved RNA structure in lincRNA Cyrano.
Structure of the RNA specialized translation initiation element that recruits eIF3 to the 5'-UTR of c-Jun
Structure of the RNA specialized translation initiation element.
A Novel Computational Platform for Sensitive, Accurate, and Efficient Screening of Nucleic Acids
Master's thesis on computational screening of nucleic acids.
SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest
Conference paper on the SeqScreen platform.
Immunohistochemical Analysis of Co-localization Between the FP Receptor and Endothelial Cells in the Bovine Corpus Luteum
Undergraduate thesis on immunohistochemical analysis.